Courses

Aerial view of agricultural fields

Course Catalogue

From soil to systems, from molecules to microbiomes11 postgraduate courses spanning systems agro-biology, molecular and microbial biotechnology, environmental science, food quality, novel foods and the One Health approach, plus an original Master’s research dissertation.

Trimester 1 · Foundations
Seedlings emerging from soil — agro-ecosystem foundations
Trimester 1 · Foundations
AFB_1.1CCompulsory8 ECTS · 3 hrs/week

Introduction to Systems Agro-Biology

A foundational course examining agricultural systems through a holistic lens, with emphasis on the biological complexity and multi-level interactions that characterise modern agro-ecosystems. Students develop systems-thinking skills that allow them to approach the complex challenges of contemporary agriculture in an integrated way.

Topics covered

  • Agricultural systems science
  • Plant ecology and ecophysiology
  • Plant water stress and adaptation
  • Soil biology and organic-matter dynamics
  • Beneficial microbe–plant interactions and soil health
  • Plant genetics and improvement
  • Ecology, biodiversity and ecosystem services
  • Climate change and agricultural adaptation
  • Water systems and aquatic pollution
  • Integrated pest and disease management
  • Precision agriculture and digital technologies
Assessment: Written final examination (70%, short-answer and multiple-choice) and a written laboratory assignment (30%). A passing grade (≥5) is required in both components.
Pipette work — molecular biology techniques
Trimester 1 · Foundations
AFB_1.2CCompulsory8 ECTS · 3 hrs/week

Modern Techniques of Molecular Biology & Bioinformatics

Modern molecular biology techniques and bioinformatics tools used in biotechnology, genomics, microbiology and the agri-food sector. The course combines theoretical knowledge with practical applications in genome analysis, microbial-community study and biotechnological research.

Learning outcomes

  • Describe basic and modern molecular biology techniques.
  • Apply DNA and RNA analysis methods.
  • Use bioinformatics tools for sequence analysis.
  • Analyse genomic and metagenomic data.
  • Interpret large-scale biological data.
  • Evaluate applications of molecular biology in biotechnology and agri-food.

Weekly schedule (13 weeks)

  • 1. Fundamentals of molecular biology
  • 2. Nucleic-acid isolation
  • 3. PCR (classical, qPCR, dPCR)
  • 4. Cloning and genetic engineering
  • 5. Genomics
  • 6. Sequencing technologies (Sanger, NGS)
  • 7. Metagenomics and microbiome
  • 8. Introduction to bioinformatics, BLAST, GenBank
  • 9. Sequence analysis
  • 10. NGS data analysis — assembly, annotation
  • 11. Transcriptomics — RNA-seq
  • 12. Applications in biotechnology
  • 13. Student presentations and recap
Cell microscopy — microbial biotechnology
Trimester 1 · Foundations
AFB_1.3CCompulsory8 ECTS · 3 hrs/week

Applied Microbial Biotechnology for Nutrition and Environmental Systems

The biotechnological utilisation of bacteria, fungi and yeasts for food and bioactive ingredient production, food biopreservation, bioremediation and waste management, and the circular bioeconomy. Theory is combined with analysis of research articles and applications across the food industry and environment.

Topics covered

  • Microbial diversity and metabolism
  • Industrial fermentations
  • Food fermentation technologies
  • Probiotics and food microbiome
  • Microbial biopreservation, bacteriocins
  • Enzymes and bioactive compounds
  • Molecular techniques for microbial analysis
  • Bioremediation of organic pollutants
  • Waste-treatment bioreactors and anaerobic digestion
  • Microbial bioenergy
  • Microbial biotechnology and circular economy
  • Student presentations and recap
Researchers analysing data — methodology and AI
Trimester 1 · Foundations
AFB_1.4CCompulsory6 ECTS · 3 hrs/week

Research Methodology & AI in Science and Biotechnology

The skills required to design, execute and evaluate high-quality scientific research in biotechnology. The course combines training in research methodology — experimental design, statistical analysis and scientific communication — with the practical use of artificial-intelligence tools in modern biotechnology.

Topics covered

  • Quantitative, qualitative and mixed-methods research
  • Experimental design: randomisation, replication, blocking
  • Sample size and statistical power
  • Descriptive statistics, probability, inference
  • Hypothesis testing, regression, multivariate methods
  • Statistical software: R, Python, SPSS
  • FAIR data principles, data management
  • Scientific writing and ethics
  • AI for biological data analysis
  • Bias in algorithmic decision-making
Assessment: Written examination at end of semester (100%) — multiple-choice questions, descriptive-statistics problems, probability and inference problems. Minimum passing grade 5/10. Examination time 3 hours.
Trimester 2 · Specialisation
Interdisciplinary scientific collaboration — One Health
Trimester 2 · Specialisation
AFB_2.1CCompulsory9 ECTS · 3 hrs/week

One Health

One Health is an interdisciplinary approach that recognises the close interconnection between human, animal and ecosystem health. The course examines the biological, environmental and socio-economic factors that influence disease transmission, food safety and the sustainability of agri-food systems.

Learning outcomes

  • Explain the principles of the One Health approach.
  • Analyse the interaction between human, animal and environmental health.
  • Evaluate the role of zoonoses in public health.
  • Describe mechanisms of antimicrobial resistance in agri-food systems.
  • Use biotechnology and molecular surveillance tools for pathogens.
  • Analyse risks in the food chain and propose management strategies.
  • Design policy interventions based on the One Health approach.

Topics covered (with case studies)

  • Ecosystems and health (emerging pathogens)
  • Zoonoses (Ebola, avian influenza, rabies)
  • Emerging and re-emerging infections (COVID-19)
  • Antimicrobial resistance (WHO, FAO strategies)
  • Food safety (Salmonella, Listeria, E. coli)
  • Biotechnology in pathogen surveillance — metagenomics
  • Animal health and production systems
  • Environmental pollution and health (toxicology)
  • Climate change and health (IPCC)
  • One Health policies and governance (WOAH, UNEP)
  • One Health case studies (international epidemiological crises)
Assessment: Final written examination (70%) and assessment of a written assignment in which students search for data on a course topic (30%).
Wheat ear — crop genomics and breeding
Trimester 2 · Specialisation · Elective
AFB_2.2SElective7 ECTS · 3 hrs/week

Advanced Crop Genomics

Contemporary plant genome sequencing technologies, marker-assisted and genomic selection, gene editing and the European regulatory framework for New Genomic Techniques (NGTs). Strategies for resistance to biotic stress and tolerance to abiotic stress, rhizosphere microbiome genomics, conservation of genetic resources and integrated multi-omics analysis.

Lectures (13 weeks)

  • 1. From genetics to genomics
  • 2. Plant genome sequencing (Illumina, PacBio HiFi, Nanopore)
  • 3. Genome annotation and comparative genomics
  • 4. Molecular markers and MAS (SNPs, SSRs, KASP, DArT)
  • 5. GWAS and genomic selection (GBLUP, RR-BLUP, ssGBLUP)
  • 6. Genome editing — CRISPR-Cas9, base editing, prime editing, NGTs
  • 7. Biotechnology for disease resistance (R-genes, NLRs, RNAi, HIGS)
  • 8. Biotechnology for abiotic-stress tolerance (drought, heat, salinity)
  • 9. Rhizosphere genomics and microbial biofertilisers
  • 10. Genetic resources and climate-adapted crops — speed breeding
  • 11. Biopesticides, insect biotechnology and IPM — SIT, gene drives
  • 12. Integrated multi-omics analysis (transcriptomics, proteomics, metabolomics, epigenomics, phenomics)
  • 13. Precision agriculture and bioinformatics in the field — UAVs, IoT, AI/ML
Assessment (in English): short-answer questions, problem solving, written work, and a project with presentation. Criteria are presented at the start of the course and uploaded to eClass.
Food chemistry analysis — quality and safety
Trimester 2 · Specialisation · Elective
AFB_2.3SElective7 ECTS · 3 hrs/week

Food Quality & Safety Biotechnology

Modern biotechnological methods used to ensure food quality and safety throughout the production and distribution chain. Students develop the theoretical understanding and practical skills required to detect, identify and address risks — pathogens, allergens, mycotoxins and GMOs — using cutting-edge molecular techniques such as PCR, qPCR, DNA barcoding and ELISA.

Topics covered

  • Food biotechnology and food quality & safety
  • GMOs and genetically modified foods
  • Authenticity, adulteration, allergens and toxins
  • Bioactive food compounds — recovery methods
  • Rapid detection of foodborne pathogens (biosensors, AI)
  • Biopreservation — bacteriocins, bacteriophages
  • Real-time shelf-life monitoring (TTIs, metabolomics)
  • AMR detection in food (WGS, SILAC)
  • Combating biofilms with nanotechnology
  • Innovative applications — 3D printing, cultured meat
  • Bioethics and food biotechnology
Assessment: Final written exam (70%) — multiple-choice (40%), true/false (20%), short-answer (10%); plus team essay with PowerPoint presentation (30%). Minimum passing grade 3.5/10 in the written exam, with 5.0 final.
Researcher exploring novel foods
Trimester 2 · Specialisation · Elective
AFB_2.4SElective7 ECTS · 3 hrs/week

Novel & Functional Foods

Current developments in food science related to the development, functionality, safety and regulatory framework of novel and functional foods. The main categories of novel foods and the technologies that support their production are examined, along with bioactive food components, bioavailability, nutrition and health claims.

Topics covered

  • Definitions and categories of novel and functional foods
  • Alternative protein sources (microalgae, mycoprotein, edible insects)
  • Precision fermentation, cultured meat, gene-edited foods
  • Nanotechnology in foods
  • Bioactivity and bioavailability of food constituents
  • Encapsulation strategies for bioactive compounds
  • Polyphenols, carotenoids, tocopherols, dietary fibres, ω-3
  • Probiotics, prebiotics, synbiotics and phytosterols
  • EU regulatory framework, labelling, health claims
  • Personalised nutrition — genomics, metabolomics, microbiome
  • Sustainability and life-cycle assessment
  • Food authenticity and fraud in functional foods
  • From scientific concept to product formulation and market entry
Lush agricultural field — environmental biotechnology
Trimester 2 · Specialisation · Elective
AFB_2.5SElective7 ECTS · 3 hrs/week

Environmental Biotechnology for Sustainable Agriculture

Biotechnological methods for solving environmental challenges in agricultural ecosystems and sustainable production. The course covers bioremediation of soils and waters polluted by agricultural activities, valorisation of agricultural waste through circular-economy approaches, biosensors and biomonitoring technologies, carbon-sequestration strategies and bioenergy production from agricultural residues.

Lectures (13 weeks)

  • 1. Introduction to environmental biotechnology in agriculture
  • 2. Soil-contamination assessment
  • 3. Biosensors and environmental monitoring
  • 4. Chromatography and mass spectrometry
  • 5. Microbial bioremediation
  • 6. Phytoremediation
  • 7. Agricultural waste management and composting
  • 8. Agricultural water-pollution treatment
  • 9. Biomaterials from agricultural residues + AOPs
  • 10. Biogas and anaerobic digestion
  • 11. Biofuels from agricultural residues
  • 12. Carbon sequestration and climate-change mitigation
  • 13. Circular economy and waste valorisation
Assessment (in English): short-answer questions, problem solving, written work and a project with presentation. Synchronous attendance is mandatory for lectures.
Crop fields — sustainable food production
Trimester 2 · Specialisation · Elective
AFB_2.6SElective7 ECTS · 3 hrs/week

Advanced Food Preservation and Packaging Technologies

Integration of biotechnological approaches for the development of innovative and sustainable packaging solutions, with emphasis on biodegradable biopolymers and the incorporation of bioactive and smart agents (peptides, enzymes) to extend food shelf life and replace conventional petroleum-based plastics.

Topics covered

  • Traditional vs modern packaging — environmental impact
  • Enzymes and biocatalysts in food preservation
  • Antimicrobial peptides and protein hydrolysates
  • Biotechnological production of biopolymers
  • Bacterial cellulose (BC) packaging materials
  • Polylactic acid (PLA) packaging materials
  • Polyhydroxybutyrate (PHB) and copolymers
  • Chitosan and pullulan-based films
  • Melanin in packaging and biotechnology
  • Nano-biotechnology — nanoencapsulation, nanosensors
  • Smart packaging and freshness indicators
  • Life-cycle assessment of biodegradable materials
  • Project presentations and case studies
Summer term · Master’s Dissertation
Researchers in academic discussion — thesis defence
Summer term · Master’s Dissertation
AFB_3.1CResearch dissertation15 ECTS · supervised research

Postgraduate Diploma Project

An original research project carried out in University laboratories or in a partner organisation, supervised by a three-member examination committee. The dissertation can be in the area of molecular biology, microbiology, food chemistry, bioinformatics or environmental biotechnology, and is written in IMRaD structure.

Workflow (9 phases)

  • Phase 1 — Topic selection by end of March; faculty propose at least five topics each.
  • Phase 2 — Formation of the three-member Examination Committee.
  • Phase 3 — Research design: question, literature review, protocol; ethics clearance where applicable.
  • Phase 4 — Conduct of research in the summer term, with biweekly supervisor meetings.
  • Phase 5 — Data processing in R, Python, SPSS or GraphPad Prism; bioinformatic analysis where applicable.
  • Phase 6 — Writing in IMRaD structure; Turnitin plagiarism check.
  • Phase 7 — Submission and oral defence (20–25 minutes) before the committee.
  • Phase 8 — Evaluation: scientific adequacy, originality, presentation quality, bibliographic coverage. Approval requires ≥5/10 from at least 2 of 3 committee members.
  • Phase 9 — Mandatory deposition in the University’s Nemertes institutional repository.
Standards followed: ICMJE Recommendations, PRISMA 2020 (for systematic reviews), and the EQUATOR Network catalogue of reporting guidelines. Responsible use of AI tools is permitted subject to supervisor authorisation.